PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G17070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 134aa    MW: 14636.4 Da    PI: 6.5218
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G17070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB154.71.6e-481811797
            NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                     mkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl+kyre+eg++
  OMERI05G17070.1  1 MKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDS 81
                     9******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.1E-44189IPR009072Histone-fold
PfamPF008081.4E-21155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.31E-32185IPR009072Histone-fold
PRINTSPR006156.6E-231937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.6E-233856No hitNo description
PRINTSPR006156.6E-235775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MKKAIPANGK IAKDAKETVQ ECVSEFISFI TSEASDKCQR EKRKTINGDD LLWAMATLGF  60
EDYIEPLKVY LQKYREMEGD SKLTAKAGDG SVKKDVLGSH GGSSSSAQGM GQQAAYNQGM  120
GYMQPQYHNG DVSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-401761893NF-YB
4awl_B1e-401761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-401761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0954390.0AB095439.1 Oryza sativa Japonica Group OsHAP3B mRNA for HAP3, partial cds.
GenBankAK1008110.0AK100811.1 Oryza sativa Japonica Group cDNA clone:J023121O11, full insert sequence.
GenBankAY2245300.0AY224530.1 Oryza sativa (japonica cultivar-group) isolate 21744 CCAAT-binding transcription factor-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639303.13e-96PREDICTED: nuclear transcription factor Y subunit B-3
RefseqXP_015639304.13e-96PREDICTED: nuclear transcription factor Y subunit B-3
RefseqXP_015639305.13e-96PREDICTED: nuclear transcription factor Y subunit B-3
SwissprotQ60EQ44e-98NFYB3_ORYSJ; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0D3G8P57e-97A0A0D3G8P5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0DSL97e-97A0A0E0DSL9_9ORYZ; Uncharacterized protein
TrEMBLB7EQX84e-96B7EQX8_ORYSJ; cDNA clone:J023121O11, full insert sequence
TrEMBLI1PWE84e-96I1PWE8_ORYGL; Uncharacterized protein
STRINGLOC_Os05g38820.11e-95(Oryza sativa Japonica Group)
STRINGORGLA05G0169600.11e-95(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.39e-58nuclear factor Y, subunit B8